I will do rna seq, metagenomics and 16s microbiome bioinformatics analysis

Afghanistan

I speak English, Arabic, Swedish, Urdu

27 orders completed

Machine Learning Engineer

Hi, I'm Emal ML Engineer and Data Scientist specializing in AI, NLP, Computer Vision, and Bioinformatics. I turn raw data into real results using Python, TensorFlow, PyTorch, GPT-4, and LangChain. Wh...
About this Gig

You have the FASTQ files. What you need is someone who can turn them into results your PI and reviewers will accept.

I analyze sequencing data for researchers and biotech teams, and I publish my own. My microbiome and neuropharmacology work has appeared in peer-reviewed journals, so I write results the way reviewers expect to read them.

What I handle:

16S and ITS amplicon: QIIME2 or DADA2, alpha and beta diversity, taxonomy, differential abundance

Bulk RNA-seq: alignment, DESeq2 or edgeR, GO and KEGG enrichment

Shotgun metagenomics: MetaPhlAn, MAG recovery, functional profiling

Single cell: Seurat clustering, marker genes, UMAP

Variants: GATK best practices, GWAS

You receive volcano plots, heatmaps, PCoA and UMAP figures at 300 DPI, statistics done properly with multiple testing correction, documented code you can rerun, and a methods paragraph written for your manuscript.

I work from FASTQ, BAM, VCF, count matrices, or a GEO or SRA accession, from Illumina, Nanopore or PacBio.

Message me with your research question and sample count and I will tell you honestly what your data can support before you order.

Expertise:

Feature learning

Classification

Clustering

Programming language:

Python

R

Colab

Frameworks:

Scikit-learn

DeepPy

Keras

PyTorch

Panda

Tools:

Jupyter Notebook

OpenCV

Colab

RStudio