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I will perform molecular docking and MD simulation using gromacs
Molecular Docking and MD Simulation Bioinformatics Expert
I’m Amir Hamza Khan, a biotechnology gold medalist with expert-level skills in molecular docking, MD simulations, and bioinformatics analysis. I specialize in protein-ligand interactions, GROMACS simu...
About this Gig
Welcome to the right place for high-quality in silico research!
I'm Amir Hamza Khan, a biotechnology gold medalist with hands-on expertise in molecular docking, molecular dynamics (MD) simulations, and bioinformatics analysis. I've worked on real academic projects involving protein-ligand docking, vaccine design, and simulation studies using industry-standard tools.
Services I Offer:
- Protein-ligand molecular docking (AutoDock Vina, PyRx)
- Molecular dynamics simulations (GROMACS)
- Binding affinity analysis
- Interaction maps (2D & 3D)
- RMSD, RMSF, Rg, H-bond analysis
- Epitope prediction (B-cell, T-cell)
- In silico vaccine design
- Publication-ready reports and plots
Tools I Use:
AutoDock Vina · GROMACS · Chimera · PyRx · VMD · Discovery Studio · Python (BioPython) · IEDB · MEGA · SwissModel
Why Choose Me?
- Academic-level accuracy
- 100% reproducible and documented results
- Free consultation before ordering
- Fast response, quick delivery
- Research experience with publications
Message me before placing an order for custom quotes or multi-protein projects.
Let's bring your docking/simulation project to life with precision and speed!
FAQ
Can I get a custom offer for bulk or long-term projects?
Absolutely. I support long-term academic or commercial projects with discounted rates and consistent quality.
What do you need from me to get started?
Please share your protein (PDB) and ligand (SDF or SMILES) files, or I can help retrieve them. Also let me know your objective (docking, simulation, etc.).
What kind of results will I get?
Depending on the package, you’ll receive: Docked structure (PDB format) Binding energy (ΔG) 2D/3D interaction maps MD simulation graphs (RMSD, RMSF, etc.) A well-structured scientific PDF report
What if I don’t know which tool or method to choose?
No problem! Just message me your idea or target protein, and I’ll guide you to the best approach for your goal.
