I will help you in protein peptide, dna docking and md simulation
Computational Biologist and Data Scientist
Level 2
Has met high performance criteria and has a proven track record for meeting client expectations.
Highly Responsive
Known for exceptionally quick replies
About this Gig
DockVision is more than a typical freelance service. Most sellers can offer bioinformatics services. The real difference is knowing which method to use, how to design the workflow correctly, and how to turn raw computational output into scientifically meaningful results. That is where my expertise stands apart.
I am a computational Scientist with 5+ years of hands-on experience and 100+ completed projects for clients across 30+ countries. I handle complex research workflows that go beyond simply running software and delivering basic output.
My expertise includes:
- Protein-Ligand Docking
- Protein-Protein Docking
- Protein-DNA/RNA Docking
- Metal Ion Docking
- Nano-particle Docking
- Peptide Docking
- Membrane Simulations
- Nucleic Acid Simulations
- Peptide/Polymer Simulations
- Enhanced-Sampling MD Simulations
Post-Simulation Analysis:
- MM/PBSA & MM/GBSA
- PCA/DCCM/ FEL
- SASA & Rg
- H-Bond Analysis
- Clustering Analysis
- ProteinLigand Interaction Analysis
- Secondary Structure Analysis
- Contact Map Analysis
- Distance & Angle Analysis
- Residue Interaction
My goal is to deliver scientifically sound, reproducible analysis with clear interpretation, publication-quality visualization and well organized results.
My Portfolio
FAQ
What is protein–peptide docking?
Protein–peptide docking predicts how a peptide binds to a target protein and identifies key interactions and binding sites.
Which tools do you use for protein–peptide docking? .
I use HADDOCK, ClusPro, AutoDock Vina, Rosetta FlexPepDock, Schrödinger, and MOE for accurate docking results
Can you analyze 2D and 3D interactions?
Yes, I provide detailed 2D interaction maps and 3D structural visualization of the protein–peptide complex.
Do you perform Molecular Dynamics (MD) on protein–peptide complexes?
Yes, I simulate the complexes over time to study stability, flexibility, and interaction dynamics.
What analyses are included after MD simulation?
RMSD, RMSF, Radius of Gyration (Rg), hydrogen bonds, SASA, and binding free energy (MM-PBSA/MM-GBSA) are all included.
Can you predict binding affinity for peptides?
Yes, I provide binding scores and interaction profiles to rank peptide candidates.
Are your results suitable for publication?
Yes, all reports include publication-ready figures, graphs, and scientific interpretations.
How long does a protein–peptide docking project take?
Docking usually takes 1–3 days; MD simulations depend on the requested simulation length (e.g., 50–200 ns).
8 reviews for this Gig
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| (2) | ||
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Rating Breakdown
- Seller communication level
- Quality of delivery
- Value of delivery
Sort By
M maalotaibi

Saudi Arabia
Ongoing collaborationThe quality of the work and the turnaround time are excellent. The service is highly professional, and I have worked with him several times.
$100-$200
Price
2 days
Duration
Helpful?A aashamrani

Saudi Arabia
Ongoing collaborationVery good!
$200-$400
Price
6 days
Duration
Helpful?J joy_hj

United States
Ongoing collaborationExcellent delviery was asap
$100-$200
Price
5 days
Duration
Helpful?J joy_hj

United States
Ongoing collaborationnice work recom
$50
Price
4 days
Duration
Helpful?J just_som_motion

Italy
Ongoing collaborationAttenzione ai dettagli, super consigliato
$100-$200
Price
8 days
Duration
Helpful?
8 reviews for this Gig
| (6) | ||
| (2) | ||
| (0) | ||
| (0) | ||
| (0) |
Rating Breakdown
- Seller communication level
- Quality of delivery
- Value of delivery
Sort By
M maalotaibi

Saudi Arabia
Ongoing collaborationThe quality of the work and the turnaround time are excellent. The service is highly professional, and I have worked with him several times.
$100-$200
Price
2 days
Duration
Helpful?A aashamrani

Saudi Arabia
Ongoing collaborationVery good!
$200-$400
Price
6 days
Duration
Helpful?J joy_hj

United States
Ongoing collaborationExcellent delviery was asap
$100-$200
Price
5 days
Duration
Helpful?J joy_hj

United States
Ongoing collaborationnice work recom
$50
Price
4 days
Duration
Helpful?J just_som_motion

Italy
Ongoing collaborationAttenzione ai dettagli, super consigliato
$100-$200
Price
8 days
Duration
Helpful?

