I will perform epigenetic analysis integrative

Dr. Ramirez

Spain

I speak English, Spanish, Catalan

Bioinformatics made simple

Lead Analyst at INTEGRATIVE BIOANALYTICS. I’m a lead bioinformatician and former wet-lab scientist at Dana-Farber Cancer Institute and UT Southwestern. My priorities are scientific rigor, clear comm...
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About this Gig

What is included:

ATAC-seq / ChIP-seq / Cut & Run/Tag


Extensive Quality control

Alignment + Peak calling (Bowtie2/MACS3)

Consensus peaks, overlap, and signal.

Differential peak analysis (DiffBind)

Visualization: PCA, interactive volcano plot.

Genomic peak annotation (ChIPseeker)

Functional peak annotation (ENCODE-SCREEN)

Genome tracks for visualization (BigWig)

Custom annotation with datasets of interest.

Evidence-based protein footprinting (LOLA/ReMap2022)

Known and de novo motif analysis (HOMER).

Pathway analysis based on regulatory domains (GREAT)

Biological report

QC Report

Technical report

Minor revisions and consulting.

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