I will analyze immunoreceptor tcr bcr sequencing data

Germany

I speak English, German

10 orders completed

Simple Solutions for Complex Biomedical Data

Hi, my name is Jonathan Alles. I am an independent bioinformatics and data engineering consultant. Through my agency, EVOBYTE Digital Biology, I support professionals with biomedical data engineering ...
About this Gig

Do you need support in analyzing, integrating or interpreting immunoreceptor sequencing data, from (single cell) TCR or BCR-seq assays?


What I Offer:

Bioinformatics Analysis

  • Bioinformatic processing of sequencing raw data
  • Aggregation, filtering, cleaning
  • Metadata annotation
  • TCR/BCR sequence alignment and quantification
  • Gene usage statistics and statistical comparison
  • TCR/BCR Tracking
  • Clustering of receptors
  • Integration with public data sources (e.g. VDJ-DB)

Visualization & Reporting

  • Jupyter notebook including analysis code
  • Custom PDF or HTML reports
  • Dashboards for data query

Pipeline Development & Automation

  • Automation and scaling of analysis pipelines
  • Database and cloud integration
  • Containerization

Data Curation

  • Curation and assembly of data packages from literature or public repositories


Tech Stack

Python / Pandas / scipy / Jupyter / TF / Bash / MiXCR / Python Packages for TCR/BCR Bioinformatics


Let's Build Together!

Have a project in mind? Message me to discuss your requirements, and I'll provide a customized plan and offer that aligns perfectly with your goals.

Programming language:

Python

Other

Technology:

Excel

Jupyter Notebook

Analysis Type:

Quantitative Analysis

Qualitative Analysis

Expertise:

Experiment design

Algorithms

Statistics

Tools:

Other

My Portfolio

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