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I will analyze immunoreceptor tcr bcr sequencing data
Simple Solutions for Complex Biomedical Data
Hi, my name is Jonathan Alles.
I am an independent bioinformatics and data engineering consultant.
Through my agency, EVOBYTE Digital Biology, I support professionals with biomedical data engineering ...
Level 1
Has met certain performance criteria and shows strong potential in the marketplace.
About this Gig
Do you need support in analyzing, integrating or interpreting immunoreceptor sequencing data, from (single cell) TCR or BCR-seq assays?
What I Offer:
Bioinformatics Analysis
- Bioinformatic processing of sequencing raw data
- Aggregation, filtering, cleaning
- Metadata annotation
- TCR/BCR sequence alignment and quantification
- Gene usage statistics and statistical comparison
- TCR/BCR Tracking
- Clustering of receptors
- Integration with public data sources (e.g. VDJ-DB)
Visualization & Reporting
- Jupyter notebook including analysis code
- Custom PDF or HTML reports
- Dashboards for data query
Pipeline Development & Automation
- Automation and scaling of analysis pipelines
- Database and cloud integration
- Containerization
Data Curation
- Curation and assembly of data packages from literature or public repositories
Tech Stack
Python / Pandas / scipy / Jupyter / TF / Bash / MiXCR / Python Packages for TCR/BCR Bioinformatics
Let's Build Together!
Have a project in mind? Message me to discuss your requirements, and I'll provide a customized plan and offer that aligns perfectly with your goals.
