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I will analyze immunoreceptor tcr bcr sequencing data
Simple Solutions for Complex Biomedical Data
Hi, my name is Jonathan Alles.
I am an independent bioinformatics and data engineering consultant.
Through my agency, EVOBYTE Digital Biology, I support professionals with biomedical data engineering ...
About this Gig
Do you need support in analyzing, integrating or interpreting immunoreceptor sequencing data, from (single cell) TCR or BCR-seq assays?
What I Offer:
Bioinformatics Analysis
- Bioinformatic processing of sequencing raw data
- Aggregation, filtering, cleaning
- Metadata annotation
- TCR/BCR sequence alignment and quantification
- Gene usage statistics and statistical comparison
- TCR/BCR Tracking
- Clustering of receptors
- Integration with public data sources (e.g. VDJ-DB)
Visualization & Reporting
- Jupyter notebook including analysis code
- Custom PDF or HTML reports
- Dashboards for data query
Pipeline Development & Automation
- Automation and scaling of analysis pipelines
- Database and cloud integration
- Containerization
Data Curation
- Curation and assembly of data packages from literature or public repositories
Tech Stack
Python / Pandas / scipy / Jupyter / TF / Bash / MiXCR / Python Packages for TCR/BCR Bioinformatics
Let's Build Together!
Have a project in mind? Message me to discuss your requirements, and I'll provide a customized plan and offer that aligns perfectly with your goals.
