I will analyze single cell rna seq and spatial transcriptomics data

Do you need support in analyzing, integrating or interpreting single cell omics data?

I support research teams in data analysis for scRNA-Seq, single cell immune receptor or spatial omics analysis.

Customized analysis are possible: Get in touch for a quote.

What I Offer:

Bioinformatics Analysis

• Bioinformatic processing of sequencing raw data
• Aggregation, filtering, cleaning, batch correction
• Metadata ingestion
• Clustering and cluster annotation
• Differential gene expression
• Trajectory inference
• GSEA / GO Term Analysis
• Spatial neighborhood analysis

Visualization & Reporting

• Jupyter notebook including analysis code
• Custom PDF or HTML reports
• Dashboards for data query

Pipeline Development & Automation

• Automation and scaling of analysis pipelines
• Database and cloud integration
• Containerization

Data Curation

• Collect (single-cell) omics data for a specific indication, therapeutic modality, species,...
• Mine public data source and databases and return integrated dataset

Tech Stack

Python / Pandas / scVerse / scipy / Jupyter / TF / Bash / Cell Rank / squidpy / scVelo

Let's Build Together!

Have a project in mind? Message me to discuss your requirements, and I'll provide a customized