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I will analyze tcga GEO and public cancer transcriptomics data
PhD Bioinformatician, RNA seq, Genomics, Biostatistics, R and Python
I am a bioinformatician with a PhD in Bioinformatics and over 11 years of experience in computational biology. I use R and Python for bulk and single-cell RNA-seq, ATAC-seq, WGS/WES, TCGA/GEO analysis...
Level 1
Has met certain performance criteria and shows strong potential in the marketplace.
About this Gig
I analyze public cancer transcriptomics datasets from TCGA, GEO, and similar research repositories.
Services can include dataset and metadata review, expression preprocessing, differential expression, survival analysis, clinical-variable associations, gene correlation, pathway enrichment, immune or molecular subgroup comparisons, and cross-cohort validation. The workflow will be matched to the research question and the information available in each dataset.
You will receive the agreed figures and result tables, reproducible R or Python code where applicable, and a concise interpretation that states the main findings and limitations.
This service is for research and educational use only. It does not provide clinical diagnosis, treatment recommendations, or patient-specific medical interpretation.
Please message me before ordering with the cancer type, dataset accession or study, genes or pathways of interest, planned comparisons, and required outputs.
My Portfolio
FAQ
Can you help select a suitable TCGA or GEO dataset?
Yes. Send the cancer type, biological question, sample requirements, and preferred data type so I can assess suitable public cohorts.
Which analyses can be included?
The scope may include differential expression, survival analysis, correlation, enrichment, subgroup comparison, clinical-variable associations, and cross-cohort validation.
Will I receive the analysis code?
Yes, when code is included in the selected package. I can provide reproducible R or Python scripts, notebooks, and result tables.
Do you provide clinical interpretation?
No. This gig provides research bioinformatics analysis and does not provide diagnosis, treatment advice, or patient-specific medical interpretation.
