3+ years of specialized experience in bacterial genomics, bioinformatics, and AI/ML integration
Built end-to-end pipelines for bacterial genome assembly, annotation, and comparative genomics
Hands-on expertise with tools like BLAST, MEGA, iTOL, BPGA, and databases such as NCBI, EnsemblBacteria.
Services Offered Bacterial Genome Analysis
- Comprehensive bacterial genome analysis using BLAST, MEGA, iTOL, and pan-genome tools (e.g., BPGA)
- Construction and annotation of phylogenetic trees and visualization with iTOL
- Pan-genome profiling (core, accessory, unique gene analysis) across multiple bacterial strains
- Integration and analysis of GEO datasets for bacterial transcriptomics
- Enrichment analysis (GO/KEGG) for functional interpretation of bacterial gene sets
- Development of custom ML pipelines to identify biomarkers, resistance genes, or evolutionary patterns
- Scalable pipelines for comparative genomics, drug target discovery, and microbial classification