Browse categories
Explore
Fiverr Pro
English
$
USD
I will run 100ns 33 analysis molecular dynamics simulations gromacs
Biotechnologist, CADD Bioinformatics and Scientific Reseaech, IP Research
Supporting life-science research through computational drug discovery and bioinformatics services. BTGenZ specializes in molecular docking, molecular dynamics (MD) simulations, QSAR/3D-QSAR, virtual s...
About this Gig
Using GROMACS, I provide simulations and a comprehensive 33-analysis suite, subject to system suitability.
What you get:
- Structural Stability: RMSD, RMSF, radius of gyration (Rg), SASA, and DSSP.
- Molecular Interactions: Hydrogen bonds, salt bridges, hydrophobic contacts, ProLIF fingerprints, distance, angle, and dihedral analysis.
- Binding Energy: MM-PBSA and MM-GBSA.
- Advanced Analysis: PCA, DCCM, trajectory clustering, free energy landscape (FEL), and Ramachandran analysis.
- Additional Analysis: QC, PBC centering, hydration dynamics, RDF, MSD, spatial density, pocket dynamics, interface area, shape descriptors and representative structures, plus applicable specialized analyses.
- Outputs: Raw simulation files, numerical data, analysis plots, and processed structures/trajectories where applicable.
Interactive HTML Report: $300 extra. View a sample: https://sujay-19m.github.io/BTGenZ-Molecular-Dynamics-Scientific-Report/
Need longer simulations, molecular docking, QSAR, or integrated CADD services? Please message me for custom pricing before ordering.
Domain:
Other
Expertise:
Other
Programming language:
Python
Tools:
Other
Technology:
Other
Models & methods:
Other
My Portfolio
FAQ
Will I receive all 33 analyses for any simulation duration, including 1 ns or 100 ns?
Yes. Every standard MD simulation package includes the complete 33-analysis suite, whether you select 1 ns, 100 ns, or a longer duration. Analysis applicability depends on your molecular system and research objective.
Can I request only selected analyses instead of all 33?
Yes. Custom analysis packages are available if you need specific results. You must select a minimum of 13–16 analyses. If you need more than 16 analyses, please ask about our bundled packages for better value.
Do you have a price chart for simulation durations and custom analyses?
Yes. We have a detailed price chart for simulation durations and individual analysis modules. Message me before ordering if you need a custom combination or a simulation beyond the listed packages.
What deliverables will I receive?
You will receive raw simulation outputs, numerical analysis data, plots, and processed structures or trajectories where applicable. An interactive HTML scientific report is available separately for $300. View a sample: https://sujay-19m.github.io/BTGenZ-Molecular-Dynamics-Scientific-Report/
Do you provide molecular docking, QSAR, or integrated CADD services?
Yes. In addition to GROMACS-based molecular dynamics, I offer molecular docking, QSAR modelling, and integrated CADD services. Please message me before ordering so we can discuss your research requirements, scope, pricing, and delivery timeline.
