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$
USD
I will run molecular docking and dynamics simulations
Dr. Zainab K.
Level 2
4.8
4.8
Gig Summary
About this gig
At The Freelance Bubble, we provide professional molecular docking and molecular dynamics simulation services for drug discovery, virtual screening, and protein-ligand interaction studies. We focus on reproducible workflows, clear interpretation, and publication-ready results.
Our Packages Include:
- Docking Starter: Docking of 1-2 ligands with a target protein, including binding affinity, best-pose visualization, interaction analysis, and ADMET assessment.
- Binding Insight: Docking of 5-10 ligands with comparative scores, binding-site mapping, interaction profiling, pose analysis, and ADMET assessment.
- Dynamic Discovery Suite: Complete docking plus MD simulation up to 100 ns, including RMSD, RMSF, radius of gyration, SASA, and binding-stability analysis. Longer simulations can be arranged through a custom offer.
Tools: AutoDock, PyRx, GROMACS, AMBER, PyMOL, Chimera, and SwissADME.
Deliverables can include plots, interaction figures, result tables, detailed reports, and reproducible scripts on request.
Please message us before ordering to customize your project.
Get to know Dr. Zainab K.
Dr. Zainab K.
Cofounder The Freelance Bubble LLC
Level 2
- FromPakistan
- Member sinceMay 2025
- Avg. response time1 hour
- Last delivery1 week
Languages
English, Urdu, Punjabi
As Co-Founder of The Freelance Bubble, I work with a multidisciplinary team of 23+ PhD scholars delivering high-quality research and technical support. I am a biotechnologist turned bioinformatician specializing in in-silico vaccine design, immunoinformatics, drug repurposing, molecular docking, genomics, NGS analysis, and computational pipelines. I also contribute to research workshops and training programs, support startup with branding and visuals, and am involved in entrepreneurship through the clothing brand NayeeReet.
My Portfolio
FAQ
What input files do you need from me?
Typically, I need your protein structure (PDB format) and ligand(s) in MOL2/SDF/PDBQT format. If you don’t have them, I can help prepare them.
What software do you use?
I use AutoDock Vina, PyRx for docking, and GROMACS (or AMBER upon request) for MD simulations. Visualizations are created using PyMOL, Chimera, or VMD.
Can you perform simulations for any protein?
Yes, as long as a valid 3D structure is available (PDB or homology model), I can run docking and MD simulations for it.
Will I receive a report?
Yes. Every package includes a detailed PDF report with methods, results, plots (e.g., RMSD, RMSF), and binding visuals. Premium packages also include input/output files and scripts.
Are these results suitable for publication or thesis work?
Absolutely. I follow research-grade workflows and provide publication-ready visuals and data.
Is my data kept confidential?
Yes. Your data is fully confidential and will not be shared or reused under any circumstance.
Reviews
5 reviews for this Gig
| (4) | ||
| (1) | ||
| (0) | ||
| (0) | ||
| (0) |
Rating Breakdown
- Seller communication level
- Quality of delivery
- Value of delivery
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Most relevant
C chameleonamy
United States
Project was completed on time and followed my specifications. I would work with this Fiverr again!
$200-$400
Price
6 days
Duration
Z 
Seller's Response
Helpful?F faalsaeed
Saudi Arabia
Ongoing collaborationGreat communication, fast responses, and professional work. Very cooperative and reliable. Highly recommended.
$50-$100
Price
4 days
Duration
Z Seller's Response
Helpful?A audreylee04
Australia
Ongoing collaborationVery professional! I am happy with the service. :)
$100-$200
Price
11 days
Duration
Z Seller's Response
Helpful?A amohseni298_
United States
Ongoing collaborationDr. Zainab has been a true professional, very knowledgeable, a pleasure to work with. She is honest and straight forward lady. the quality of her work is outstanding. She offers valuable professional advise to her clients. I am truly satisfy with her work and i would recommend her to my colleagues
$100-$200
Price
2 days
Duration
Z Seller's Response
Helpful?I imenlaib
Algeria
Delivered on time with all the requested details. A good freelancer.
$200-$400
Price
4 weeks
Duration
Z Seller's Response
Helpful?
Reviews
5 reviews for this Gig
| (4) | ||
| (1) | ||
| (0) | ||
| (0) | ||
| (0) |
Rating Breakdown
- Seller communication level
- Quality of delivery
- Value of delivery
Sort By
Most relevant
C chameleonamy
United States
Project was completed on time and followed my specifications. I would work with this Fiverr again!
$200-$400
Price
6 days
Duration
Z Seller's Response
Helpful?F faalsaeed
Saudi Arabia
Ongoing collaborationGreat communication, fast responses, and professional work. Very cooperative and reliable. Highly recommended.
$50-$100
Price
4 days
Duration
Z Seller's Response
Helpful?A audreylee04
Australia
Ongoing collaborationVery professional! I am happy with the service. :)
$100-$200
Price
11 days
Duration
Z Seller's Response
Helpful?A amohseni298_
United States
Ongoing collaborationDr. Zainab has been a true professional, very knowledgeable, a pleasure to work with. She is honest and straight forward lady. the quality of her work is outstanding. She offers valuable professional advise to her clients. I am truly satisfy with her work and i would recommend her to my colleagues
$100-$200
Price
2 days
Duration
Z Seller's Response
Helpful?I imenlaib
Algeria
Delivered on time with all the requested details. A good freelancer.
$200-$400
Price
4 weeks
Duration
Z Seller's Response
Helpful?
