I will analyze virtual gene knockout results with sctenifoldknk

I analyze existing scTenifoldKnk outputs and organize virtual gene-knockout results around your target gene and cell type.

The Basic package covers one target and one cell type using your existing response or network files. I check identifiers, summarize differential-regulation results and create clear plots and editable tables. Comparisons across supplied seeds can be included when agreed before ordering.

You receive result tables, figures, the analysis script and a README recording the inputs and settings. One revision is included for the agreed analysis.

Please send your target gene, cell-type labels, existing output files and the question you want answered. For enrichment, supply the tested genes and background gene list.

If you only have a GEO accession or a Seurat object, message me first: network construction and raw-data processing need a separate scope. I use AI-assisted coding where appropriate and check the code and outputs. Written communication is welcome.